In Vitro Cellular Uptake Assays for SLC Transporter Interaction Assessment

Drug transporters are routinely assessed in the drug discovery and development processes as potential sources of drug-drug interaction (DDI) or organ toxicity risks. They can also be targets for drug action or delivery. A test compound can be substrate and/or inhibitor to a transporter, and these interactions are mostly tested in vitro, using cell systems that overexpress a single transporter of interest. SOLVO, a Charles River Company, offers three such assay systems: the Vesicular Transport and the Transfected Monolayer Assay for assessing Efflux transporters, and a Cellular Uptake transporter assay. The choice from these setups is driven by client project needs and the test compound's PK properties.

Over the past few years various regulatory agencies have published new or updated guidelines on studying DDIs. Such recommendations were recently summarized in the internationally harmonized ICH M12 guidelines, which were adopted by the FDA, EMA, NMPA, PMDA, and other local agencies since its finalization in 2024. In addition to the transporter studies requested for drug approval (usually in the IND phase), there is also an expanding knowledge base on the general role of drug transporters in drug ADMET properties. Drug transporters are routinely screened in early development to assess compound permeability properties, as well as to detect potential toxic effects, such as hepatotoxicity, and their recognition as potential therapeutic targets or mediators of tissue-specific drug delivery is also growing. 

Why do SLC transporter interactions matter?

From a functional perspective, clinically relevant drug transporters are categorized as either efflux or uptake transporters depending on the relative direction of transport. Uptake transporters typically belong to Solute Carrier (SLC) protein families, and are usually facilitative or secondary-active, using either an electrochemical gradient or ion gradients to facilitate the movement of substrates across membranes. SLC transporters generally mediate active compound to active drug elimination via excretory organs, especially the liver and the kidneys, but can also mediate drug access to different other tissues. It is mostly uptake transporters specific to these excretory organs that are often involved in drug-drug interactions, therefore their assessment is required by regulatory agencies for IND applications

Multiple uptake transporters have a key role in mediating the traffic of endogenous substrates including signaling molecules and metabolites. Depending on their substrate range, this makes SLCs also popular pharmaceutical targets, for example, transport of signaling nucleosides via ENT transporters can be targeted in several CNS conditions such as epilepsy and seizures.

SLC Transporter Assays to Meet Your Needs

Compound interaction with uptake transporters can be twofold. A compound is substrate of an efflux transporter if it is relocated by it across the cell membrane in an active manner, and it can also be a transport inhibitor. Substrates are often inhibitors as well via a competitive mechanism, but non-competitive transporter inhibition is also often observed.

Assays using transporter-overexpressing cells are a popular and useful tool for assessing compounds as substrates to uptake transport. For substrate assessment, a test compound is co-incubated with the transporter-expressing cells, and its intracellular accumulation is measured, while inhibition assays measure the compound’s effect on the accumulation of a reference probe substrate. This assay is suitable for most types of test compounds regardless of their passive permeability or other PK properties.

  • Human Cellular Uptake Transporter Assays Availability

    Uptake (SLC) transporter assays are available with a wide range of transporters overexpressed in various cellular backgrounds. All available assays with human uptake transporters are summarized in the table below. Assays were fully characterized using a pair of well-known substrate and inhibitor specific to the transporter in question to ensure assay performance. Assay characterization data is available upon request.

    Human Cellular Uptake Transporter Assays

    TransporterBackground*Probe substrate**Reference inhibitor**
    OATP1B1HEK-293E217βGRifampicin
    OATP1B3CCK-8
    OAT1TenofovirProbenecid
    OAT3E3S
    OCT1SumatriptanVerapamil
    OCT2Metformin
    MATE1MetforminPyrimethamine
    MATE2-KMetformin
    NTCPTCTCDC
    PEPT1CHOGly-SarTyr-Phe
    PEPT2Gly-SarCefadroxil
    ENT1MDCKIIUridineDilazep
    ENT2AdenosineDipyridamole
    ENT4HEK-293MPP+Pyrimethamine
    LAT1LeucineJPH203
    LAT2LeucineJX009
    OCTN1TEAVerapamil
    OCTN2CHOCarnitinePyrimethamine
    OCT3HEK-293MPP+Quinidine
    OAT2v1cGMPIndomethacin
    OAT4E3SBenzbromarone
    OAT7E3SSulfobromophtalein
    OATP2B1E3SRifamycin SV
    OATP1A2E3SSulfobromoftalein
    CNT1MDCKIIUridineAdenosine
    CNT2Uridine
    CNT3Uridine2’-deoxycitidne
    MCT8T3Sorafenib
    MCT10T3Imatinib
    THTR1HEK-293ThiamineAmprolium
    THTR2ThiamineFedratinib
    SGLT1AMGPhlorizin
    SGLT2Methyl α-D-glucopyranosideDapaglifozin
    SGLT5D-fructose
    SGLT6Myo-inozitol
    URAT1MDCKIIUric acidBenzbromarone
    HPT1Gly-SarCefadroxil
    ASBTHEK-293TCTCDC
    ASCT2L-serineL-cysteine
    OSTαβE3SKo143

    *Cellular background of the overexpression cell line. 
    **For certain transporters, multiple probe substrates and reference inhibitors are available.

  • Preclinical Species Cellular Uptake Transporter Assays Availability

    Uptake (SLC) transporter assays are available with a wide range of transporters overexpressed in various cellular backgrounds. All available assays with preclinical species uptake transporters are summarized in the table below. In vitro models using preclinical species transporters allow for inter-species comparison and for assessing human-relevance of interaction findings. Assays were fully characterized using a pair of well-known substrate and inhibitor specific to the transporter in question to ensure assay performance.

    Preclinical Species Cellular Uptake Transporter Assays

    TransporterBackground*
    Mouse Sglt2HEK-293
    Rat AsbtHEK-293
    Rat NtcpHEK-293
    Rat Oat1CHO
    Rat Oatp1a1HEK-293
    Rat Oatp1a4HEK-293
    Rat Oatp1b2HEK-293
    Rat OstαβHEK-293
    Rat Pept2CHO
    Dog Sglt2HEK-293
    Cyno NtcpHEK-293
    Cyno Oatp1b1HEK-293
    Cyno Oatp1b3HEK-293
    Cyno Oatp2b1HEK-293

    *Cellular background of the overexpression cell line.

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ICH M12 Updates: How the New Global Standard for DDI Impacts Your In Vitro Studies
The recent update to the International Council of Harmonisation (ICH) M12 guidelines provides a definitive version of their guidance. See what impacts ICH M12 impacts your in vitro studies in this on-demand webinar.
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Benefits of Uptake (SLC) Transporter Interaction Assays

Uptake transporters with the appropriate substrate preference can also be leveraged for specific drug targeting, for example, the small peptide uptake transporters PEPT1-2 can facilitate intestinal compound uptake. The diversity of SLCs and their potential utility in disease treatment and tissue targeting is still being discovered, but discovery stage interaction assessment screens are already more and more common. When selecting the uptake transporters to be studied for a specific drug development program, it is important to consider their localization, main function, and their putative interaction with the test compound.

Single-transporter overexpression systems are the preferred in vitro model for assessing compound interactions due to their high sensitivity and specificity. In this case, the transporter protein of interest is overexpressed in a host cell line that has low intrinsic transporter expression and is easy to reliably culture and maintain. Certain transporters can also be tested in tissue barrier models to mimic a more physiological context, for example, most SLCs are maintained in cryopreserved hepatocytes or freshly isolated kidney proximal tubule cells. These systems, however, contain several transporters with potentially additive effects on the handling of the test compound, therefore individual transporters are best assessed in overexpression systems.

Uptake transporter inhibition or substrate assessment.
Uptake transporter inhibition or substrate assessment. The Cellular Uptake assay is suitable for testing compounds as potential efflux substrates and inhibitors, regardless of their passive permeability. This is the preferred approach for both regulatory studies and discovery stage work. (TA - Test Article)

The Transfected Cell-based Uptake assay is a selective and sensitive in vitro system for assessing test compound interaction with uptake transporters. It is the most commonly used assay format for testing compounds both as potential substrate and inhibitors. Data generated with this assay system is routinely accepted by regulatory agencies, and it is also a popular tool for early-stage screens in case uptake carriers are therapeutic targets or mediators for compound targeting. Our site offers assay setups adapted for the specific needs of our Sponsors’ projects, ranging from fully regulatory interaction assessments to discovery stage multi-compound screens. interaction assessments to discovery stage multi-compound screens.

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