Pioneering Excellence in Microbial Identification
Accurate and timely microbial identification is crucial for tracking and trending environmental monitoring data that guide critical decisions and protect you from releasing contaminated products. With more than 620,000 environmental isolates processed every year through our Accugenix microbial identification service labs, we continuously expand our organism libraries based on real samples frequently recovered from QC labs and manufacturing sites around the world.
Specializing in microbial identification of bacterial and fungi isolates and strain typing of EM isolates, we use the latest DNA sequence-based and MALDI-TOF technologies to provide accurate and reliable microbial identification services to more than 1,000 facilities worldwide. Our flexible solutions allow clients to outsource to experts or bring services in-house.

Your Guide to Fast, Accurate Microbial Identification
With so many ID methods and providers out there, it’s tough to choose. We’ll guide you through how each test delivers results, so you can find the best fit for you.
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Accugenix® Microbial Identification Services
Encompassing over 9,773 relevant bacterial and 5,013 fungal species, Accugenix microbial identification databases are continually updated based on frequently occurring organisms in facilities around the world.
MALDI-TOF Bacterial Identification and Fungal Identification Services
Fast, reliable, and reproducible results for routine testing. Containing 17,358 relevant bacterial and fungal organisms, the Accugenix microbial identification MALDI-TOF database is continuously validated to ensure consistent performance and high accuracy.
16S and ITS DNA Sequencing Services
16S rRNA and ITS sequencing services provide detailed insights into the microbial communities within your samples, enabling precise identification of bacteria and fungi. Accugenix sequencing libraries contain 9,773 relevant bacterial and 5,013 fungal species, continually updated based on frequently occurring organisms in facilities around the world.
Strain Typing Services
When production facilities experience microbial contamination, it becomes a priority to determine the source. Strain differentiation using DNA sequence-based typing such as Multi Locus Strain Typing (MLST) and Single Locus Strain Typing (SLST), helps QC pharmaceutical manufacturers track microbial strains that may be associated with contamination.
Next-Generation Sequencing (NGS) Services
Traditional sequencing methods can be limited in what they can offer if samples are not pure or if they cannot be cultured, if they fail to generate usable data, or if the target DNA is large making the traditional methods complex, expensive, and time-consuming. NGS for bacterial identification and fungal ID enables high throughput, scalability, and novel applications.
Environmental Monitoring Performance Qualifications (EMPQs) Testing and Reporting Services
General EMPQ processes for cleanroom qualifications are labor-intensive, time-consuming, and often lack the depth of analysis required for comprehensive risk assessment. Accugenix EMPQ identification and report service package is designed for a speedy EMPQ process, data management, resource allocation, and regulatory compliance.
Accugenix® Sample Submission
Sample submission of your bacterial or fungal isolates for analysis via our Customer Web Portal is simple and fast.
Axcess® MALDI-TOF System
The Axcess® microbial identification system features the precision of the Bruker MALDI Biotyper instrument with the industry-leading Accugenix proprietary microbial libraries through a secure online network.
Tracking & Trending IDs
Accugenix provides a comprehensive tracking and trending solution with enhanced microbial environmental monitoring and data management capabilities, which can be accessed via the Customer Web Portal.
Ensuring regulatory compliance when outsourcing microbial identification testing
Working with a partner that complies with federal and international regulatory requirements is critical for most industries. While each manufacturer must follow their own quality standards, an ISO 17025 accreditation ensures technical competence of laboratories to perform specific tasks. The American Association for Laboratory Accreditation (A2LA) issues these accreditations which guarantee that results are obtained according to valid methods and procedures that comply with precise standards.
Customer Resources
The Accugenix Customer Care & Support Team is available globally to provide microbial ID support to customers, and with our Customer Portal you have timely and secure access to your microbial ID results.
Microbial Testing Locations
Over the last 35 years, our 9 laboratories have identified more microorganisms than any other company or service laboratory. This has allowed us to develop and refine validated, proprietary libraries and methods of interpretation that are unrivaled in the industry. Our global presence allows for diverse and relevant microbial database development while offering a harmonized solution to all QC micro laboratories.
Accugenix® Locations:
| Region | Location |
|---|---|
| North America | |
| Europe | |
| Australia | |
| Asia | |
| South America |

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Frequently Asked Questions (FAQs) About Microbial Identification and Strain Typing
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What factors should be considered when choosing a fungal and bacterial identification lab partner?
Identifying microbes in your facility takes time and effort. While everyone's microbial identification needs vary, there are certain considerations that everyone can apply when selecting a fungal and bacterial identification lab partner. Check out Four Tips for Identifying Microbes in Your Facility to get a better understanding.
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How can I detect contamination sooner using rapid microbiological testing methods?
While many laboratories see the clear advantages of outsourcing microbial identification, they often overlook optimizing their contamination testing methods to gain even more benefits. Detecting microbial contamination with Celsis® amplified ATP-bioluminescence helps identify potential quality issues quicker, eliminates subjectivity in test results, and allows investigations to be completed sooner. The assay provides industry-leading product compatibility, capable of testing everything from preservative-containing vaccines, opaque inks and dyes, and debris-laden products such as personal wipes. Learn if your product is compatible by contacting one of our experts.
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